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CN09_11610 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_11610" - Protein required for attachment to host cells in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_11610Protein required for attachment to host cells; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)    
Predicted Functional Partners:
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (572 aa)
              0.813
CN09_11615
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
 
          0.584
CN09_12115
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (200 aa)
         
  0.577
serS
Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (427 aa)
              0.527
CN09_11605
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (145 aa)
 
          0.525
surE
5’-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5’-monophosphates; Belongs to the SurE nucleotidase family (257 aa)
              0.477
CN09_04065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
   
          0.460
CN09_11600
Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method- Protein Homology (455 aa)
 
          0.437
CN09_03220
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
 
          0.415
CN09_10850
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
              0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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