CN09_11630 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_11630

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (87 aa)

Predicted Functional Partners:

CN09_05415

0.763

panC

0.701

CN09_27330

0.645

CN09_13485

0.637

CN09_07055

0.629

CN09_10405

0.621

CN09_09930

0.619

CN09_27595

0.609

CN09_27440

0.600

CN09_06445

0.592

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_05415	CN09_06445	CN09_05415	CN09_06445	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.613
CN09_05415	CN09_09930	CN09_05415	CN09_09930	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.517
CN09_05415	CN09_10405	CN09_05415	CN09_10405	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.718
CN09_05415	CN09_11630	CN09_05415	CN09_11630	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.763
CN09_05415	CN09_27330	CN09_05415	CN09_27330	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.746
CN09_05415	CN09_27440	CN09_05415	CN09_27440	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_05415	CN09_27595	CN09_05415	CN09_27595	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.497
CN09_06445	CN09_05415	CN09_06445	CN09_05415	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.613
CN09_06445	CN09_07055	CN09_06445	CN09_07055	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.692
CN09_06445	CN09_09930	CN09_06445	CN09_09930	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.421
CN09_06445	CN09_10405	CN09_06445	CN09_10405	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.658
CN09_06445	CN09_11630	CN09_06445	CN09_11630	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_06445	CN09_27330	CN09_06445	CN09_27330	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.471
CN09_06445	CN09_27440	CN09_06445	CN09_27440	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.630
CN09_06445	CN09_27595	CN09_06445	CN09_27595	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.551
CN09_07055	CN09_06445	CN09_07055	CN09_06445	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.692
CN09_07055	CN09_10405	CN09_07055	CN09_10405	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.487
CN09_07055	CN09_11630	CN09_07055	CN09_11630	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.629
CN09_07055	CN09_13485	CN09_07055	CN09_13485	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.709
CN09_07055	CN09_27330	CN09_07055	CN09_27330	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.422

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