CN09_11680 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_11680

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)

Predicted Functional Partners:

CN09_11685

0.929

CN09_11690

0.905

CN09_23625

0.809

CN09_30430

0.801

CN09_18865

0.757

CN09_16030

0.742

ribB

0.725

CN09_06240

0.706

CN09_05610

0.647

CN09_07255

0.637

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_05610	CN09_07255	CN09_05610	CN09_07255	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.493
CN09_05610	CN09_11680	CN09_05610	CN09_11680	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.647
CN09_05610	CN09_11690	CN09_05610	CN09_11690	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.432
CN09_05610	CN09_16030	CN09_05610	CN09_16030	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.607
CN09_05610	CN09_18865	CN09_05610	CN09_18865	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.560
CN09_05610	CN09_30430	CN09_05610	CN09_30430	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.540
CN09_06240	CN09_11680	CN09_06240	CN09_11680	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_07255	CN09_05610	CN09_07255	CN09_05610	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.493
CN09_07255	CN09_11680	CN09_07255	CN09_11680	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.637
CN09_07255	CN09_11690	CN09_07255	CN09_11690	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.622
CN09_07255	CN09_16030	CN09_07255	CN09_16030	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.676
CN09_07255	CN09_18865	CN09_07255	CN09_18865	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.770
CN09_07255	CN09_30430	CN09_07255	CN09_30430	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.564
CN09_11680	CN09_05610	CN09_11680	CN09_05610	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.647
CN09_11680	CN09_06240	CN09_11680	CN09_06240	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	0.706
CN09_11680	CN09_07255	CN09_11680	CN09_07255	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.637
CN09_11680	CN09_11685	CN09_11680	CN09_11685	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.929
CN09_11680	CN09_11690	CN09_11680	CN09_11690	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.905
CN09_11680	CN09_16030	CN09_11680	CN09_16030	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.742
CN09_11680	CN09_18865	CN09_11680	CN09_18865	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.757

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About