STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_11765Hemolysin secretion protein d; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (414 aa)    
Predicted Functional Partners:
macB
Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides
  
 0.987
CN09_11770
Acriflavine resistance protein b; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 0.977
CN09_34005
Nodulation protein NodT; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.902
CN09_25555
Hemolysin secretion protein d; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
  
  
 0.875
CN09_24930
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.858
CN09_29335
Rnd transporter; Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.830
CN09_28875
Acriflavine resistance protein b; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 0.827
CN09_29005
Rnd transporter; Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.821
CN09_28880
Acriflavine resistance protein b; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 0.812
CN09_02755
Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.811
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (12%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >