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CN09_11880 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_11880" - UPF0260 protein CN09_11880 in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_11880UPF0260 protein CN09_11880; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0260 family (161 aa)    
Predicted Functional Partners:
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
              0.999
CN09_11885
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (731 aa)
              0.912
rnd
Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family (381 aa)
 
          0.884
CN09_11890
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
              0.823
CN09_11895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
              0.819
CN09_17610
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
              0.744
CN09_16240
Riboflavin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ribF family (327 aa)
              0.744
CN09_16235
HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
              0.744
CN09_01965
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method- Protein Homology (197 aa)
              0.744
CN09_01820
L-threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde (348 aa)
              0.744
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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