CN09_11915 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_11915

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)

Predicted Functional Partners:

topA

0.999

CN09_11920

0.786

CN09_07045

0.776

CN09_27580

0.765

CN09_08630

0.763

CN09_13790

0.760

CN09_11925

0.757

CN09_03300

0.748

CN09_16825

0.748

CN09_10415

0.724

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03300	CN09_07045	CN09_03300	CN09_07045	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.709
CN09_03300	CN09_08630	CN09_03300	CN09_08630	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_03300	CN09_10415	CN09_03300	CN09_10415	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.664
CN09_03300	CN09_11915	CN09_03300	CN09_11915	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.748
CN09_03300	CN09_13790	CN09_03300	CN09_13790	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.641
CN09_03300	CN09_16825	CN09_03300	CN09_16825	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.587
CN09_03300	CN09_27580	CN09_03300	CN09_27580	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.715
CN09_07045	CN09_03300	CN09_07045	CN09_03300	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.709
CN09_07045	CN09_10415	CN09_07045	CN09_10415	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.753
CN09_07045	CN09_11915	CN09_07045	CN09_11915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_07045	CN09_16825	CN09_07045	CN09_16825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.762
CN09_07045	CN09_27580	CN09_07045	CN09_27580	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.728
CN09_08630	CN09_03300	CN09_08630	CN09_03300	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_08630	CN09_10415	CN09_08630	CN09_10415	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.606
CN09_08630	CN09_11915	CN09_08630	CN09_11915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.763
CN09_08630	CN09_16825	CN09_08630	CN09_16825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.768
CN09_08630	CN09_27580	CN09_08630	CN09_27580	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.661
CN09_10415	CN09_03300	CN09_10415	CN09_03300	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.664
CN09_10415	CN09_07045	CN09_10415	CN09_07045	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.753
CN09_10415	CN09_08630	CN09_10415	CN09_08630	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.606

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