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CN09_11940 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_11940" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_11940Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (143 aa)    
Predicted Functional Partners:
CN09_27515
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (240 aa)
 
          0.743
CN09_05285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.657
CN09_32475
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (79 aa)
   
          0.644
CN09_17570
Recombinase RecB; Derived by automated computational analysis using gene prediction method- Protein Homology (1063 aa)
   
          0.596
CN09_01630
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (70 aa)
   
          0.593
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (791 aa)
 
          0.585
CN09_21495
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (81 aa)
   
          0.584
CN09_10325
Metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
   
          0.579
CN09_17530
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (599 aa)
   
     
  0.578
CN09_28455
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (216 aa)
 
          0.568
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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