STRINGSTRING
CN09_12005 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12005" - Polysaccharide deacetylase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
CN09_12005Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)    
Predicted Functional Partners:
CN09_12020
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
 
          0.619
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.516
CN09_22395
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
 
          0.508
CN09_04180
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
          0.500
CN09_12010
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
   
        0.479
CN09_29355
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (166 aa)
 
          0.470
CN09_05825
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
 
     
  0.470
CN09_09695
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
          0.466
CN09_12015
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)
              0.464
CN09_04260
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (486 aa)
   
          0.460
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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