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CN09_12140 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12140" - Asp/Glu racemase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12140Asp/Glu racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)    
Predicted Functional Partners:
CN09_12135
Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
              0.682
CN09_12130
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (151 aa)
              0.656
CN09_04435
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
          0.585
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
   
          0.579
CN09_12145
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
              0.566
CN09_04630
Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
   
          0.554
CN09_03935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
          0.526
CN09_06965
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
 
          0.523
CN09_01795
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (138 aa)
   
          0.520
CN09_22380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (189 aa)
   
          0.505
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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