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CN09_12160 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12160" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12160Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)    
Predicted Functional Partners:
CN09_12125
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
   
          0.681
CN09_27050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (85 aa)
 
          0.586
CN09_27045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (105 aa)
 
          0.551
CN09_23440
Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
   
          0.527
CN09_23430
D-allulose-6-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
   
          0.526
CN09_25560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
   
          0.495
CN09_23450
Myo-inositol catabolism protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
   
          0.484
CN09_22860
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.479
CN09_16845
Protoheme IX farnesyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (45 aa)
   
          0.459
CN09_18300
Exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
   
          0.442
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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