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CN09_12225 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12225" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12225Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)    
Predicted Functional Partners:
CN09_12230
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)
              0.889
CN09_12220
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
              0.810
CN09_02185
Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class I fructose-bisphosphate aldolase family (340 aa)
              0.722
CN09_11660
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
        0.657
CN09_11665
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)
        0.604
CN09_30600
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)
 
        0.580
CN09_14020
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (123 aa)
 
        0.576
CN09_15850
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
 
        0.560
CN09_11675
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family (413 aa)
 
          0.548
CN09_16865
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
 
          0.543
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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