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CN09_12385 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12385" - Major facilitator transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12385Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)    
Predicted Functional Partners:
CN09_12380
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (208 aa)
 
          0.902
CN09_28930
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (479 aa)
 
     
  0.572
CN09_03470
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)
   
          0.569
CN09_14870
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (473 aa)
 
     
  0.533
CN09_15995
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (474 aa)
 
     
  0.462
CN09_32675
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the major facilitator superfamily (475 aa)
 
     
  0.461
CN09_12475
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (522 aa)
   
          0.448
CN09_27835
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)
         
  0.400
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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