STRINGSTRING
CN09_12435 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12435" - Prevent-host-death protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12435Prevent-host-death protein; Derived by automated computational analysis using gene prediction method- Protein Homology (90 aa)    
Predicted Functional Partners:
CN09_12430
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
 
 
 
  0.986
CN09_13215
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (97 aa)
 
 
 
  0.806
CN09_12440
Chloride channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (453 aa)
              0.552
CN09_13975
2’-5’ RNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
          0.532
CN09_13600
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (186 aa)
   
          0.485
CN09_05570
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method- Protein Homology (126 aa)
 
        0.461
CN09_23720
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (495 aa)
   
        0.433
CN09_10745
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)
   
          0.428
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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