STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12485Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (353 aa)    
Predicted Functional Partners:
CN09_08645
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.945
CN09_10545
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.926
CN09_02445
Heat resistant agglutinin 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.925
CN09_06175
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.899
CN09_25440
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.893
CN09_02440
HEAT resistant agglutinin 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.889
CN09_28215
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.877
pal
Membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity
   
 0.861
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
 
  
 0.858
CN09_00270
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family
   
 0.857
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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