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CN09_12625 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12625" - Conjugal transfer protein TraD in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_12625Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method- Protein Homology (75 aa)    
Predicted Functional Partners:
CN09_12615
Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method- Protein Homology (1533 aa)
 
     
  0.852
CN09_18230
Conjugal transfer protein TraG; VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology (637 aa)
 
     
  0.839
CN09_33755
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
 
     
  0.791
CN09_33740
Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology (1108 aa)
 
     
  0.683
CN09_12620
Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (74 aa)
              0.679
CN09_19595
Conjugal transfer system TraA; oriT nicking enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology (1108 aa)
 
     
  0.678
CN09_19600
Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology (97 aa)
   
          0.631
CN09_12715
VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
   
          0.620
CN09_33745
Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
   
          0.618
CN09_12695
P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
   
          0.618
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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