STRINGSTRING
CN09_12630 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12630" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12630Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)    
Predicted Functional Partners:
CN09_18515
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (601 aa)
 
          0.785
CN09_18525
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
 
          0.692
CN09_12145
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
          0.457
CN09_12640
Cytochrome B561; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
              0.424
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
              0.420
CN09_04050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (65 aa)
   
          0.407
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (7%) [HD]