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CN09_12660 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12660" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12660Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
              0.905
CN09_02450
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
          0.888
CN09_13630
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
          0.837
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
 
     
  0.793
CN09_08645
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)
 
     
  0.769
CN09_12655
UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
         
  0.766
CN09_08650
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.765
CN09_08320
Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (929 aa)
 
 
      0.755
CN09_15710
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
 
     
  0.754
CN09_08660
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (482 aa)
   
          0.754
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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