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CN09_12770 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12770" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12770ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)    
Predicted Functional Partners:
CN09_12765
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
 
   
  0.949
CN09_12760
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
   
  0.887
CN09_23105
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
 
   
  0.748
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
   
  0.647
CN09_32190
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
   
  0.605
CN09_33365
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.604
CN09_23100
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
   
  0.550
CN09_12755
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (368 aa)
 
   
  0.548
CN09_12750
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
 
          0.493
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
         
  0.481
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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