CN09_00525 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

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Experiments

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Textmining

[Homology]

Score

CN09_00525

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (103 aa)

Predicted Functional Partners:

CN09_33735

0.803

CN09_19590

0.802

CN09_33665

0.789

CN09_33685

0.789

CN09_19535

0.788

CN09_33700

0.783

CN09_19550

0.782

CN09_19540

0.778

CN09_33690

0.777

CN09_33655

0.771

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00525	CN09_19535	CN09_12875	CN09_19535	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.788
CN09_00525	CN09_19540	CN09_12875	CN09_19540	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology	0.778
CN09_00525	CN09_19550	CN09_12875	CN09_19550	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_00525	CN09_19590	CN09_12875	CN09_19590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.802
CN09_00525	CN09_33655	CN09_12875	CN09_33655	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology	0.771
CN09_00525	CN09_33665	CN09_12875	CN09_33665	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.789
CN09_00525	CN09_33685	CN09_12875	CN09_33685	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.789
CN09_00525	CN09_33690	CN09_12875	CN09_33690	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology	0.777
CN09_00525	CN09_33700	CN09_12875	CN09_33700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_00525	CN09_33735	CN09_12875	CN09_33735	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.803
CN09_19535	CN09_00525	CN09_19535	CN09_12875	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.788
CN09_19535	CN09_19540	CN09_19535	CN09_19540	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology	0.965
CN09_19535	CN09_19550	CN09_19535	CN09_19550	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology	0.961
CN09_19535	CN09_19590	CN09_19535	CN09_19590	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.829
CN09_19535	CN09_33655	CN09_19535	CN09_33655	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology	0.833
CN09_19535	CN09_33665	CN09_19535	CN09_33665	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.831
CN09_19535	CN09_33690	CN09_19535	CN09_33690	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_19535	CN09_33700	CN09_19535	CN09_33700	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology	0.834
CN09_19535	CN09_33735	CN09_19535	CN09_33735	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.844
CN09_19540	CN09_00525	CN09_19540	CN09_12875	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.778

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Coexpression

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