CN09_00525 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_00525

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (103 aa)

Predicted Functional Partners:

CN09_33735

0.803

CN09_19590

0.802

CN09_33685

0.789

CN09_33665

0.789

CN09_19535

0.788

CN09_33700

0.783

CN09_19550

0.782

CN09_19540

0.778

CN09_33690

0.777

CN09_33655

0.771

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00525	CN09_19535	CN09_12875	CN09_19535	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.788
CN09_00525	CN09_19540	CN09_12875	CN09_19540	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_00525	CN09_19550	CN09_12875	CN09_19550	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_00525	CN09_19590	CN09_12875	CN09_19590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.802
CN09_00525	CN09_33655	CN09_12875	CN09_33655	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.771
CN09_00525	CN09_33665	CN09_12875	CN09_33665	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method- Protein Homology	0.789
CN09_00525	CN09_33685	CN09_12875	CN09_33685	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.789
CN09_00525	CN09_33690	CN09_12875	CN09_33690	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_00525	CN09_33700	CN09_12875	CN09_33700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method- Protein Homology	0.783
CN09_00525	CN09_33735	CN09_12875	CN09_33735	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.803
CN09_19535	CN09_00525	CN09_19535	CN09_12875	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.788
CN09_19535	CN09_19540	CN09_19535	CN09_19540	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology	0.965
CN09_19535	CN09_19550	CN09_19535	CN09_19550	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method- Protein Homology	0.961
CN09_19535	CN09_19590	CN09_19535	CN09_19590	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.829
CN09_19535	CN09_33655	CN09_19535	CN09_33655	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.833
CN09_19535	CN09_33665	CN09_19535	CN09_33665	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method- Protein Homology	0.831
CN09_19535	CN09_33690	CN09_19535	CN09_33690	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology	0.838
CN09_19535	CN09_33700	CN09_19535	CN09_33700	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method- Protein Homology	0.834
CN09_19535	CN09_33735	CN09_19535	CN09_33735	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.844
CN09_19540	CN09_00525	CN09_19540	CN09_12875	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About