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CN09_12885 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12885" - Transposase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_12885Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.999
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
              0.999
CN09_12805
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (66 aa)
 
     
  0.839
KEA05610.1
Derived by automated computational analysis using gene prediction method- GeneMarkS+ (66 aa)
 
     
  0.839
CN09_19315
Serine recombinase; Derived by automated computational analysis using gene prediction method- Protein Homology (689 aa)
 
   
  0.811
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (491 aa)
              0.731
CN09_19270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
     
  0.685
CN09_03960
UPF0114 protein CN09_03960; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
 
            0.683
CN09_19305
Isocitrate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology (115 aa)
 
          0.679
fpg
Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (296 aa)
         
  0.679
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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