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CN09_12930 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12930" - Kinase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12930Kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)    
Predicted Functional Partners:
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1199 aa)
         
  0.997
CN09_25635
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
              0.966
CN09_02775
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (612 aa)
 
 
 
  0.956
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
 
   
  0.898
CN09_12935
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
 
   
  0.882
CN09_03125
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
 
  0.840
CN09_10105
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
 
  0.837
CN09_16715
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
 
  0.831
CN09_22105
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (578 aa)
 
 
  0.826
CN09_06235
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (355 aa)
 
 
  0.798
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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