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CN09_13005 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13005" - Iron ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13005Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)    
Predicted Functional Partners:
CN09_13010
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (533 aa)
   
  0.988
CN09_13015
Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system (353 aa)
   
  0.975
CN09_04425
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (324 aa)
   
   
  0.824
CN09_18125
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
              0.700
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
         
  0.631
CN09_07720
Nucleoside triphosphate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
              0.572
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (344 aa)
         
  0.536
gcvT
Glycine cleavage system protein T; Catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; Derived by automated computational analysis using gene prediction method- Protein Homology (378 aa)
         
  0.531
CN09_13000
Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
         
  0.477
CN09_05595
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (564 aa)
   
   
  0.470
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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