polA protein (Agrobacterium rhizogenes) - STRING interaction network

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Score

polA

DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)

Predicted Functional Partners:

rnhB

0.999

dnaG

0.999

obgE

0.999

CN09_18560

0.999

fpg

0.999

uvrB

0.999

pheT

0.999

CN09_07325

0.999

CN09_15290

0.999

uvrA

0.999

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_07325	CN09_15290	CN09_07325	CN09_15290	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.981
CN09_07325	CN09_18560	CN09_07325	CN09_18560	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_07325	dnaG	CN09_07325	CN09_04510	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family	0.410
CN09_07325	obgE	CN09_07325	CN09_18000	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family	0.545
CN09_07325	pheT	CN09_07325	CN09_13825	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	0.575
CN09_07325	polA	CN09_07325	CN09_13050	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.999
CN09_15290	CN09_07325	CN09_15290	CN09_07325	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.981
CN09_15290	CN09_18560	CN09_15290	CN09_18560	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_15290	dnaG	CN09_15290	CN09_04510	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family	0.971
CN09_15290	pheT	CN09_15290	CN09_13825	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	0.999
CN09_15290	polA	CN09_15290	CN09_13050	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.999
CN09_15290	rnhB	CN09_15290	CN09_16450	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	0.933
CN09_15290	uvrA	CN09_15290	CN09_07475	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	0.999
CN09_15290	uvrB	CN09_15290	CN09_05980	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...]	0.873
CN09_18560	CN09_07325	CN09_18560	CN09_07325	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_18560	CN09_15290	CN09_18560	CN09_15290	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18560	dnaG	CN09_18560	CN09_04510	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family	0.999
CN09_18560	polA	CN09_18560	CN09_13050	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.999
dnaG	CN09_07325	CN09_04510	CN09_07325	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.410
dnaG	CN09_15290	CN09_04510	CN09_15290	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.971

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