STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13160Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology (348 aa)    
Predicted Functional Partners:
glk
Belongs to the bacterial glucokinase family
       0.870
CN09_27590
Membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
 
     0.791
CN09_06485
Amino acid regulated cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.762
CN09_06480
Hypothetical protein; UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.756
CN09_17810
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_27595
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_14115
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.753
queG
annotation not available
       0.752
CN09_14125
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.752
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate
       0.739
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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