CN09_13165 protein (Agrobacterium rhizogenes)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Score

CN09_13165

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (120 aa)

Predicted Functional Partners:

CN09_13170

0.845

CN09_13160

0.629

CN09_13175

0.556

mgsA

0.436

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_13160	CN09_13165	CN09_13160	CN09_13165	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.629
CN09_13160	CN09_13170	CN09_13160	CN09_13170	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.629
CN09_13160	CN09_13175	CN09_13160	CN09_13175	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_13160	mgsA	CN09_13160	CN09_13155	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.739
CN09_13165	CN09_13160	CN09_13165	CN09_13160	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.629
CN09_13165	CN09_13170	CN09_13165	CN09_13170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_13165	CN09_13175	CN09_13165	CN09_13175	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.556
CN09_13165	mgsA	CN09_13165	CN09_13155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.436
CN09_13170	CN09_13160	CN09_13170	CN09_13160	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.629
CN09_13170	CN09_13165	CN09_13170	CN09_13165	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.845
CN09_13170	CN09_13175	CN09_13170	CN09_13175	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_13170	mgsA	CN09_13170	CN09_13155	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.456
CN09_13175	CN09_13160	CN09_13175	CN09_13160	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_13175	CN09_13165	CN09_13175	CN09_13165	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.556
CN09_13175	CN09_13170	CN09_13175	CN09_13170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
mgsA	CN09_13160	CN09_13155	CN09_13160	Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.739
mgsA	CN09_13165	CN09_13155	CN09_13165	Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.436
mgsA	CN09_13170	CN09_13155	CN09_13170	Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.456

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Coexpression

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