CN09_13585 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_13585

Peptidase T4; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)

Predicted Functional Partners:

CN09_17955

0.999

CN09_13575

0.884

CN09_13565

0.860

CN09_13580

0.831

CN09_06730

0.744

CN09_24645

0.729

CN09_06715

0.726

CN09_06720

0.696

murI

0.664

CN09_13570

0.654

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_06715	CN09_06720	CN09_06715	CN09_06720	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.878
CN09_06715	CN09_06730	CN09_06715	CN09_06730	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.749
CN09_06715	CN09_13585	CN09_06715	CN09_13585	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	Peptidase T4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.726
CN09_06715	murI	CN09_06715	CN09_06570	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis	0.718
CN09_06720	CN09_06715	CN09_06720	CN09_06715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	0.878
CN09_06720	CN09_06730	CN09_06720	CN09_06730	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.823
CN09_06720	CN09_13585	CN09_06720	CN09_13585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase T4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.696
CN09_06730	CN09_06715	CN09_06730	CN09_06715	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	0.749
CN09_06730	CN09_06720	CN09_06730	CN09_06720	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.823
CN09_06730	CN09_13585	CN09_06730	CN09_13585	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase T4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_13565	CN09_13570	CN09_13565	CN09_13570	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_13565	CN09_13575	CN09_13565	CN09_13575	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.978
CN09_13565	CN09_13580	CN09_13565	CN09_13580	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.475
CN09_13565	CN09_13585	CN09_13565	CN09_13585	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase T4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_13565	CN09_24645	CN09_13565	CN09_24645	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_13570	CN09_13565	CN09_13570	CN09_13565	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_13570	CN09_13575	CN09_13570	CN09_13575	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_13570	CN09_13580	CN09_13570	CN09_13580	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.451
CN09_13570	CN09_13585	CN09_13570	CN09_13585	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase T4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.654
CN09_13575	CN09_13565	CN09_13575	CN09_13565	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.978

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About