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CN09_13610 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13610" - Membrane protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13610Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (411 aa)    
Predicted Functional Partners:
CN09_13615
Cellulase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family (359 aa)
 
          0.953
CN09_28775
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
     
  0.923
CN09_13620
Sugar transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (556 aa)
 
     
  0.897
CN09_28785
Sugar transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (504 aa)
 
     
  0.814
CN09_27845
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
          0.764
CN09_15705
N-acetyl mannosamine transferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyltransferase 26 family (272 aa)
 
     
  0.750
CN09_32480
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
   
          0.745
CN09_04725
Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
     
  0.739
CN09_23720
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (495 aa)
         
  0.693
CN09_10215
Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology (721 aa)
         
  0.680
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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