CN09_13615 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_13615

Belongs to the glycosyl hydrolase 5 (cellulase A) family (359 aa)

Predicted Functional Partners:

CN09_13610

0.953

CN09_28775

0.907

CN09_04725

0.758

CN09_13620

0.756

CN09_23675

0.701

CN09_24525

0.701

CN09_28785

0.681

CN09_23720

0.641

CN09_10215

0.611

CN09_13600

0.575

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_04725	CN09_10215	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.472
CN09_04725	CN09_13600	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.562
CN09_04725	CN09_13610	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.719
CN09_04725	CN09_13615	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	Belongs to the glycosyl hydrolase 5 (cellulase A) family	0.758
CN09_04725	CN09_23720	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology	0.673
CN09_04725	CN09_28775	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology	0.840
CN09_10215	CN09_04725	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	0.472
CN09_10215	CN09_13610	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.668
CN09_10215	CN09_13615	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Belongs to the glycosyl hydrolase 5 (cellulase A) family	0.611
CN09_10215	CN09_23675	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.693
CN09_10215	CN09_23720	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology	0.660
CN09_10215	CN09_28775	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology	0.710
CN09_13600	CN09_04725	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	0.562
CN09_13600	CN09_13610	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.519
CN09_13600	CN09_13615	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Belongs to the glycosyl hydrolase 5 (cellulase A) family	0.575
CN09_13610	CN09_04725	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology	0.719
CN09_13610	CN09_10215	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.668
CN09_13610	CN09_13600	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.519
CN09_13610	CN09_13615	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Belongs to the glycosyl hydrolase 5 (cellulase A) family	0.953
CN09_13610	CN09_13620	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.897