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CN09_13630 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13630" - Glycosyl transferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_13630Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)    
Predicted Functional Partners:
CN09_12660
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
          0.837
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
 
          0.706
CN09_15710
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
 
          0.701
CN09_02385
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
   
          0.699
CN09_10280
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.676
CN09_34310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (565 aa)
   
          0.659
CN09_20310
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (172 aa)
   
          0.647
CN09_27105
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)
   
          0.638
CN09_33960
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)
   
          0.637
CN09_08320
Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (929 aa)
   
          0.632
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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