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CN09_13660 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13660" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13660ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (378 aa)    
Predicted Functional Partners:
CN09_13645
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
 
  0.880
CN09_13650
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
 
  0.871
CN09_13655
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
 
 
 
  0.862
CN09_23455
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
  0.636
CN09_18350
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
 
  0.623
CN09_13640
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
          0.620
CN09_25075
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
  0.605
CN09_25665
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
 
  0.593
CN09_25660
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
  0.593
CN09_26185
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
 
 
  0.585
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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