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CN09_13675 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13675" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13675Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)    
Predicted Functional Partners:
CN09_13670
Microcystinase C; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) (491 aa)
 
          0.968
CN09_13665
Alanine racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (367 aa)
 
          0.945
CN09_13685
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
 
          0.888
CN09_13690
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
 
          0.862
CN09_13695
Beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method- Protein Homology (639 aa)
 
          0.820
CN09_13655
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
 
          0.803
CN09_23825
Periplasmic alpha-galactoside-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (695 aa)
   
          0.750
CN09_13680
Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
 
          0.739
CN09_13640
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
          0.732
CN09_23830
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
   
          0.642
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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