STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13680Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method: Protein Homology (129 aa)    
Predicted Functional Partners:
CN09_13685
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.864
CN09_13690
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.831
CN09_13695
Beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.792
CN09_13665
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.791
CN09_13670
Microcystinase C; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC)
 
     0.767
CN09_13675
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.739
CN09_12320
Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.716
CN09_24295
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.516
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family
       0.513
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...]
  
    0.456
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (9%) [HD]