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CN09_13700 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13700" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13700Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)    
Predicted Functional Partners:
CN09_22395
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
   
          0.701
CN09_10600
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
   
          0.697
CN09_09870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
          0.697
CN09_13895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
   
          0.684
CN09_04265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (486 aa)
   
          0.675
CN09_18090
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (318 aa)
   
          0.673
CN09_16050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
   
          0.660
CN09_15835
Cell envelope biogenesis protein AsmA; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
   
          0.651
CN09_04260
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (486 aa)
   
          0.635
CN09_03555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
   
          0.612
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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