STRINGSTRING
CN09_13755 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13755" - DNA-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13755DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (189 aa)    
Predicted Functional Partners:
CN09_13760
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (173 aa)
 
          0.943
CN09_20705
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
          0.756
lepA
Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (610 aa)
              0.623
CN09_07135
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
              0.619
CN09_20315
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
 
     
  0.600
CN09_11980
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
   
   
  0.547
CN09_05305
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
   
   
  0.547
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (491 aa)
   
        0.475
CN09_31565
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (200 aa)
   
          0.426
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (4%) [HD]