STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13840Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (1838 aa)    
Predicted Functional Partners:
CN09_13835
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.994
CN09_25725
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.990
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.948
CN09_25730
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.913
CN09_06175
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.838
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.833
CN09_25735
Asp/Glu/hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.827
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides
       0.741
CN09_31135
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.704
CN09_27740
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.661
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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