STRINGSTRING
CN09_13855 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13855" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13855Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)    
Predicted Functional Partners:
CN09_13830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
 
          0.719
CN09_28130
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
   
          0.682
CN09_00920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (72 aa)
   
          0.648
CN09_16030
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
   
          0.639
CN09_10285
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.632
CN09_04055
Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
   
          0.625
CN09_33975
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (68 aa)
   
          0.615
CN09_11680
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
   
          0.613
CN09_00915
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (652 aa)
   
          0.613
CN09_18865
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (202 aa)
   
          0.612
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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