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CN09_13890 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13890" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13890Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)    
Predicted Functional Partners:
CN09_13885
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
 
   
  0.973
CN09_13895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
 
 
  0.965
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
   
   
  0.679
CN09_28670
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
         
  0.621
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
   
 
  0.594
CN09_10225
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
 
  0.467
CN09_24525
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (578 aa)
   
   
  0.441
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology (783 aa)
   
   
  0.441
CN09_22480
UDP-galactopyranose mutase; Catalyzes the formation of UDP-galactofuranose from UDP-galactopyranose; Derived by automated computational analysis using gene prediction method- Protein Homology (388 aa)
   
   
  0.436
CN09_05765
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (614 aa)
   
 
  0.430
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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