STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13895Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (608 aa)    
Predicted Functional Partners:
CN09_13890
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.965
CN09_13885
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.941
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family
       0.906
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
  
 
 0.891
CN09_24545
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.716
CN09_10245
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.711
CN09_13525
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.698
CN09_13520
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.695
CN09_15835
Cell envelope biogenesis protein AsmA; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.688
CN09_06920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.684
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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