STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13995NAD(P)H dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology (265 aa)    
Predicted Functional Partners:
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
   
 
 0.994
CN09_01525
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family
    
  0.970
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
    
  0.970
CN09_27480
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
    
  0.970
CN09_13990
Belongs to the LysR transcriptional regulatory family
 
     0.927
CN09_02870
FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.711
CN09_11755
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone
       0.704
CN09_02865
NAD(P)H dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    
0.685
CN09_02875
Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.674
CN09_31535
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.617
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (16%) [HD]