STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14020Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (123 aa)    
Predicted Functional Partners:
CN09_11675
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family
 
   
 0.839
CN09_02125
RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family
 
   
 0.836
CN09_03775
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily
 
   
 0.820
CN09_11665
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.764
CN09_01390
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.745
CN09_02365
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.740
CN09_11660
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
0.649
CN09_06145
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.646
CN09_14015
DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_14025
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.583
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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