CN09_14075 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_14075

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)

Predicted Functional Partners:

CN09_32480

0.748

ppk

0.640

CN09_20915

0.598

CN09_04730

0.585

CN09_14060

0.584

CN09_14065

0.561

CN09_27385

0.548

CN09_28345

0.531

CN09_02665

0.500

CN09_25085

0.499

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02665	CN09_04730	CN09_02665	CN09_04730	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.451
CN09_02665	CN09_14075	CN09_02665	CN09_14075	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.500
CN09_02665	CN09_27385	CN09_02665	CN09_27385	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.608
CN09_04730	CN09_02665	CN09_04730	CN09_02665	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.451
CN09_04730	CN09_14075	CN09_04730	CN09_14075	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_04730	CN09_20915	CN09_04730	CN09_20915	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.467
CN09_04730	CN09_28345	CN09_04730	CN09_28345	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.647
CN09_04730	CN09_32480	CN09_04730	CN09_32480	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.700
CN09_14060	CN09_14065	CN09_14060	CN09_14065	5’-methylthioadenosine nucleosidase; Enables the cleavage of the glycosidic bond in both 5’-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method- Protein Homology	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.940
CN09_14060	CN09_14075	CN09_14060	CN09_14075	5’-methylthioadenosine nucleosidase; Enables the cleavage of the glycosidic bond in both 5’-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.584
CN09_14065	CN09_14060	CN09_14065	CN09_14060	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	5’-methylthioadenosine nucleosidase; Enables the cleavage of the glycosidic bond in both 5’-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.940
CN09_14065	CN09_14075	CN09_14065	CN09_14075	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.561
CN09_14075	CN09_02665	CN09_14075	CN09_02665	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.500
CN09_14075	CN09_04730	CN09_14075	CN09_04730	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_14075	CN09_14060	CN09_14075	CN09_14060	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	5’-methylthioadenosine nucleosidase; Enables the cleavage of the glycosidic bond in both 5’-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.584
CN09_14075	CN09_14065	CN09_14075	CN09_14065	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.561
CN09_14075	CN09_20915	CN09_14075	CN09_20915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.598
CN09_14075	CN09_25085	CN09_14075	CN09_25085	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.499
CN09_14075	CN09_27385	CN09_14075	CN09_27385	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_14075	CN09_28345	CN09_14075	CN09_28345	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.531

page 1 of 2

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About