STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14075Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (358 aa)    
Predicted Functional Partners:
CN09_32480
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.748
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
       0.635
CN09_20915
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.598
CN09_14060
5'-methylthioadenosine nucleosidase; Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.589
CN09_04730
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.585
CN09_14065
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.561
CN09_27385
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.548
CN09_28345
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.531
CN09_02665
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.500
CN09_25085
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.499
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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