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CN09_14085 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14085" - Signal peptide protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14085Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (373 aa)    
Predicted Functional Partners:
CN09_14090
Thiol oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (519 aa)
 
        0.991
CN09_14080
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (361 aa)
 
        0.990
CN09_14095
Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
 
   
  0.982
CN09_10470
Copper oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (463 aa)
 
          0.868
CN09_17920
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (161 aa)
         
  0.752
CN09_04595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
   
          0.592
CN09_01485
Metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
          0.555
CN09_03385
Sterol desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
              0.551
CN09_04590
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
   
          0.539
ccmC
Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (253 aa)
         
  0.520
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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