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CN09_14135 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14135" - Signal peptide protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14135Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (54 aa)    
Predicted Functional Partners:
CN09_27695
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
   
          0.662
CN09_10005
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (105 aa)
   
          0.646
CN09_01700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
   
          0.617
CN09_07030
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)
   
          0.616
CN09_10285
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.611
CN09_11870
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (82 aa)
   
          0.590
CN09_13590
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (64 aa)
 
          0.541
CN09_16585
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
   
          0.497
CN09_08495
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
   
          0.496
CN09_16650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
   
          0.495
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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