CN09_14200 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_14200

Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology (322 aa)

Predicted Functional Partners:

CN09_01825

0.999

CN09_07710

0.958

CN09_04750

0.892

CN09_10375

0.859

CN09_03985

0.854

CN09_01545

0.839

CN09_07980

0.825

CN09_08255

0.817

CN09_15390

0.817

CN09_34055

0.799

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01545	CN09_01825	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.630
CN09_01545	CN09_04750	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.893
CN09_01545	CN09_07710	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme; In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family	0.914
CN09_01545	CN09_14200	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.839
CN09_01825	CN09_01545	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.630
CN09_01825	CN09_03985	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_01825	CN09_04750	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.983
CN09_01825	CN09_07710	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme; In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family	0.849
CN09_01825	CN09_07980	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.630
CN09_01825	CN09_08255	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.999
CN09_01825	CN09_10375	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.999
CN09_01825	CN09_14200	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_01825	CN09_15390	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.999
CN09_01825	CN09_34055	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Thiamine biosynthesis protein ThiF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.594
CN09_03985	CN09_01825	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03985	CN09_04750	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.434
CN09_03985	CN09_10375	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.999
CN09_03985	CN09_14200	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.854
CN09_04750	CN09_01545	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.893
CN09_04750	CN09_01825	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.983