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CN09_14285 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14285" - VirR in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14285VirR; Derived by automated computational analysis using gene prediction method- Protein Homology (176 aa)    
Predicted Functional Partners:
CN09_14280
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
              0.851
CN09_14290
Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (69 aa)
 
          0.801
CN09_32450
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
          0.725
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily (440 aa)
   
        0.672
CN09_04915
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
   
   
  0.632
CN09_17970
Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
              0.614
CN09_06300
Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method- Protein Homology (642 aa)
              0.614
CN09_14275
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
              0.598
CN09_17965
Molybdate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
              0.588
CN09_22610
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (566 aa)
   
        0.534
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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