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CN09_14290 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14290" - Transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14290Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (69 aa)    
Predicted Functional Partners:
CN09_17970
Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
   
  0.958
CN09_32465
Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
 
   
  0.934
moaA
GTP 3’,8-cyclase; Catalyzes the cyclization of GTP to (8S)-3’,8-cyclo-7,8- dihydroguanosine 5’-triphosphate; Belongs to the radical SAM superfamily. MoaA family (349 aa)
 
     
  0.885
CN09_17965
Molybdate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
 
   
  0.841
CN09_17955
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
 
     
  0.828
modC
Molybdenum import ATP-binding protein ModC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family (357 aa)
 
     
  0.809
CN09_14285
VirR; Derived by automated computational analysis using gene prediction method- Protein Homology (176 aa)
 
          0.801
CN09_32450
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
     
  0.783
cysA
Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family (348 aa)
   
   
  0.755
moaC
Cyclic pyranopterin monophosphate synthase; Catalyzes the conversion of (8S)-3’,8-cyclo-7,8- dihydroguanosine 5’-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family (164 aa)
 
     
  0.732
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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