STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14515Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method: Protein Homology (221 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.999
lptB
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.999
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
   
 
 0.999
CN09_01860
D-arabinose 5-phosphate; Belongs to the SIS family. GutQ/KpsF subfamily
  
  
 0.992
CN09_14520
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.992
ribD
5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate
       0.990
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
 
 
 0.971
CN09_17085
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family
       0.883
rpoN
Rna polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
  
  
 0.866
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.844
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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