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CN09_14520 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14520" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14520Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
              0.999
CN09_14515
Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
 
     
  0.992
CN09_01860
D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily (331 aa)
              0.992
CN09_14510
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
              0.958
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (791 aa)
 
     
  0.836
CN09_14535
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)
 
          0.831
CN09_14700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
 
     
  0.771
CN09_14500
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (519 aa)
              0.771
CN09_06440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (2225 aa)
   
          0.770
CN09_17760
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (173 aa)
   
          0.766
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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