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CN09_14800 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14800" - Short-chain dehydrogenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_14800Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (280 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.626
CN09_14795
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
              0.586
CN09_04975
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
              0.568
CN09_30360
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
     
  0.566
ychF
Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (367 aa)
              0.542
CN09_30355
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
 
          0.515
CN09_28755
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
 
     
  0.479
CN09_18535
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
     
  0.471
CN09_02095
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
          0.468
CN09_16265
Sodium-solute symporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family (491 aa)
 
        0.465
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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