CN09_14900 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_14900

Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (149 aa)

Predicted Functional Partners:

CN09_04270

0.702

CN09_14895

0.702

CN09_05180

0.664

CN09_08645

0.652

CN09_08655

0.652

CN09_08650

0.639

CN09_14905

0.624

CN09_03380

0.619

CN09_19810

0.619

CN09_20090

0.619

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03380	CN09_04270	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.720
CN09_03380	CN09_05180	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.790
CN09_03380	CN09_08645	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.713
CN09_03380	CN09_08650	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.684
CN09_03380	CN09_08655	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.685
CN09_03380	CN09_14900	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.619
CN09_03380	CN09_19810	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.656
CN09_03380	CN09_20090	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.649
CN09_04270	CN09_03380	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.720
CN09_04270	CN09_05180	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.774
CN09_04270	CN09_08645	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.773
CN09_04270	CN09_08650	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.752
CN09_04270	CN09_08655	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.768
CN09_04270	CN09_14900	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.702
CN09_04270	CN09_19810	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.704
CN09_04270	CN09_20090	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.732
CN09_05180	CN09_03380	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.790
CN09_05180	CN09_04270	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.774
CN09_05180	CN09_08645	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_05180	CN09_08650	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.769